PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G054900.1
Common NameB456_001G054900, LOC105785796
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 294aa    MW: 32800 Da    PI: 8.9723
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G054900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.6e-11131178455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++e+L++l+P +    +k   Ka iL + ++Y++sL+
  Gorai.001G054900.1 131 SHSLAERVRRKKISERMEKLQRLVPGC----DKITGKALILDEIINYVQSLE 178
                         8*************************9....899***************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.06E-17125195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.74E-11125182No hitNo description
PROSITE profilePS5088815.974127177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-17127194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.9E-9131178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-9133183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MASFSTKSNP FLIDSIFSPH KISGFVEEIE NLNFDQVYSE NNEPSGSIFK EQSSTGEFTV  60
VDDNVALTSK KRRAKNGVKD EKEGKPKKQK KGNDEKKAYK GSKKDRKKGG EEPPNGRYIH  120
VRARRGQATD SHSLAERVRR KKISERMEKL QRLVPGCDKI TGKALILDEI INYVQSLESQ  180
VEFLSMKIAT LNPMFYDLGV DPESFMVKPE MVNNISSPPQ CYPTQPITTT AAAIGTAATF  240
TPTNNIPLLD TSAAFLFHQG ETSAVFSQFQ DNGSVLWEVE GSRQEFLNPF RSF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16974KKRRAK
285103PKKQKKGNDEKKAYKGSKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012467415.10.0PREDICTED: transcription factor bHLH137 isoform X1
TrEMBLA0A0D2N5U50.0A0A0D2N5U5_G
STRINGVIT_17s0000g00430.t011e-79(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87962439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.22e-49bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]